[wgs-assembler-users] Typo in fastqToCA?

[Waldbieser, G. <Geo...@AR...>]

Hi,
Under the technology flag in fastqToCA, it lists both pacbio-corrected and pacbio-raw as "uncorrected reads". Is this just a typo or a listing for a future fix?



-technology p      What instrument were these reads generated on ('illumina' is the default):
                       'none'               -- don't set any features; use -feature to set them manually
                       'sanger'             -- reads from dideoxy sequencers
                       '454'                -- reads from 454 Life Sciences; FLX, Titanium, FLX+
                       'illumina'           -- reads from Illumina; GAIIx, MiSeq, HiSeq; shorter than 160bp
                       'illumina-long'      -- reads from Illumina; GAIIx, MiSeq, HiSeq; any length
                       'pacbio-ccs'         -- reads from PacBio; Circular Consensus Sequence (CSS)
                       'pacbio-corrected'   -- reads from PacBio; uncorrected reads
                       'pacbio-raw'         -- reads from PacBio; uncorrected reads

Geoff





This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.