[wgs-assembler-users] using contigs from sanger shotgun in the assembly.

[Mayank M. <may...@ic...>]

Hej Brian,
I have preasembled sanger data from the repeated regions in my  
assembly. The repeats are too many and pretty messy to handle  
manually. I know that I can provide them to the assembler as normal  
fragments using fastaToCA.

Q1.Is there some way to give really high priority to these  
contig/unitig size fragments as each one of these reads is much high  
quality than the Illumina reads which I use with 40X coverage.

Q2. Is it possible to do backbone assembly.

Regards,
Mayank