Re: [wgs-assembler-users] reads assembled

[Walenz, B. <bw...@jc...>]

Interesting question.  It can be done, but will take a bit of work.

9-terminator/*.posmap.frgscf lists read positions in scaffolds.
Unfortunately, the read is labeled with it's CA-supplied UID.

*.gkpStore.fastqUIDmap contains a map of the CA-supplied UID back to the
original name.

>From there, it's up to you to read your input files and write the reads.

I'll look into modifying one of the assembler programs to generate this.  If
I can do it easily, I'll do it.




On 10/4/13 12:02 PM, "Cristell Navarro"
<cri...@om...> wrote:

> Hi, I'm new using celera assembler.
> 
> I was wondering if could I get a fastq file of the reads that were used
> for make the assembly...only thats reads...the effectly assembled.
> 
> Thanks in advance.
> 
> Cristell.
> 
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