[wgs-assembler-users] Erroneous ASM file

[Mayank M. <may...@ic...>]

Hello,
I have been using the unstable release of WGS assembler. I have some  
really good assemblies as per my post assembly checks.
The problem is that the {CCO tags in the asm file are all loosing the  
information whenever they have more than one unitig in the contig.  
Whenever there is more than one unitig in the contig the quality  
values of the whole consensus just become zero. The contigs loose all  
the gap information which takes into consideration the indels in the  
reads. And respectively, all the reads also loose the indel  
information in the contigs.

Regards,
Mayank Mahajan