[wgs-assembler-users] Error in gateKeeper on pacbioToCa...

[Francois S. <fra...@ir...>]

Dear all,

We are using Illumina data to correct PacBio runs, as everyone those days...

After creating (successufll) the frg file for the illumina, we launched
the pacbioToCa system, and it started to run.

However after a while, gatekeeper stopped with the following error:

"/home/sabotf/sources/wgs/Linux-amd64/bin/gatekeeper  -o
/data/projects/assembling-glab/tempIlluminaTog5681/asm.gkpStore.BUILDING
 -F  /data/projects/assembling-glab/Illumina_Tog5681clean.frg
/data/projects/assembling-glab//tempIlluminaTog5681/IlluminaTog5681.frg
> /data/projects/assembling-glab/tempIlluminaTog5681/asm.gkpStore.err 2>&1
----------------------------------------END Tue Jul 23 09:56:39 2013
(3084 seconds)
numFrags = 291073268
Stop requested after 'initialstorebuilding'.
----------------------------------------END Tue Jul 23 09:56:45 2013
(3090 seconds)
Error: The PacBio library 0 must be the last library loaded but it
preceedes 1. Please double-check your input files and try again. at
/home/sabotf/sources/wgs/Linux-amd64/bin/pacBioToCA line 1084."


Any idea ?
The pacbio input file come from the provider directly, we did not make
any change on it

Cheers

Francois

-- 
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Francois Sabot, PhD

Be realistic. Demand the Impossible.
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