[wgs-assembler-users] utgcnsfix failed

[wcyer <wcy...@16...>]

Hi Brain,
I ran CABOG successfully until reach utgcnsfix.
Utgcnsfix failed, and in the 5-consensus there is a consensus-fix.out.FAILED file:
Checking unitig consensus for b=0 to e=14704513
Could not calloc memory (32 * 1 bytes = 32)
Unexpected error.

The server has 512Gb memory.
Did I miss something?

Thanks in advance,

Gorliver


Here is the last  a few lines of output of runCA:



 ----------------------------------------START Thu Mar 28 16:17:30 2013
/share/home/caulai/software/wgs/wgs-7.0/Linux-amd64/bin/utgcnsfix \
 -g /share/home/caulai/real_data/./assembly2/ib_ass2.gkpStore \
 -t /share/home/caulai/real_data/./assembly2/ib_ass2.tigStore 2 \
> /share/home/caulai/real_data/./assembly2/5-consensus/consensus-fix.out 2>&1
sh: line 3: 17176 Aborted                 (core dumped) /share/home/caulai/software/wgs/wgs-7.0/Linux-amd64/bin/utgcnsfix -g /share/home/caulai/real_data/./assembly2/ib_ass2.gkpStore -t /
share/home/caulai/real_data/./assembly2/ib_ass2.tigStore 2 > /share/home/caulai/real_data/./assembly2/5-consensus/consensus-fix.out 2>&1
----------------------------------------END Thu Mar 28 16:20:06 2013 (156 seconds)
ERROR: Failed with signal ABRT (6)
================================================================================

runCA failed.

----------------------------------------
Stack trace:

 at /share/home/caulai/software/wgs/wgs-7.0/Linux-amd64/bin/runCA line 1237
        main::caFailure('Unitig consensus fixer failed', '/share/home/caulai/real_data/./...') called at /share/home/caulai/software/wgs/wgs-7.0/Linux-amd64/bin/runCA line 4532
        main::postUnitiggerConsensus() called at /share/home/caulai/software/wgs/wgs-7.0/Linux-amd64/bin/runCA line 5883

----------------------------------------
Failure message:

Unitig consensus fixer failed