[wgs-assembler-users] k-mer frequency threshold of OVL and OBT

[wcyer <wcy...@16...>]

Hi, everbody,
I am using CABOG to assemble a genome about 2.5Gb . Before run real data, I did some simulated assembly (about 8X data) and the threshold of OBT and OVL is from 170 to 460. But when I run CABOG on the real data, the threshold is 5633:
Reset OBT mer threshold from auto to 5633.
Reset OVL mer threshold from auto to 5633.


I see the default setting of the treshold is 'auto'. How CABOG determine this threshold? Is this number normal?


Thanks in advance.


Gorliver