Re: [wgs-assembler-users] sequence tracking

[Walenz, B. <bw...@jc...>]

Hi, Paul-

I was working on something to parse the various posmap files to generate such a report.  Per library, it counts the number of reads that end up as:

trimmed/deleted
in various types of unitig (unique, rock, surrogate, singleton)
in small/big contigs

It does a little bit of mate pair analysis, but this isn’t finished yet.

What classifications are you looking for?

b


On 12/7/12 9:21 AM, "Paul Cantalupo" <pca...@gm...> wrote:

Hi all,

Is there a way in CVS version of runCA (or even version 7.0) to get a report about what happened to each and every sequence that went into the assembly? Thank you,

Paul

Paul Cantalupo
University of Pittsburgh