[wgs-assembler-users] Unitigger output

[Quan, X. <x....@im...>]

My assembly is now in the unitigger stage. In the 4-unitigger/, I saw three files:
3.5M 2012-10-30 03:34 HX.001.bestoverlapgraph.log
12G 2012-10-29 11:41 HX.fragmentInfo
75K 2012-10-29 22:32 unitigger.err

The bestoverlapgraph.log stopped updating for nearly two days now while the unitigger (bogart) keep running occupying 100%cpu and 624gb memory but producing no result.
Below is the last few lines of the HX.001.bestoverlapgraph.log
"BestOverlapGraph()-- frag 1005759619 is suspicious (174 overlaps).
BestOverlapGraph()-- frag 1005759692 is suspicious (217 overlaps).
BestOverlapGraph()-- frag 1005759967 is suspicious (219 overlaps).
BestOverlapGraph()-- frag 1005760214 is suspicious (22 overlaps).
BestOverlapGraph()-- fra"
Was there something going wrong and bogart not really running (though seems running in top command) or it is working but not no output yet. If it is the second case, how long usually unitigger take to finish or output further result?

Thanks very much!


Xueping Quan

Imperial College London