[wgs-assembler-users] pacBioToCA spec parameter optimization

[Thomas H. <tho...@un...>]

Hi,

I would like to use the pacBioToCA correction pipeline on data for a 
bigger genomes (Gb size), hence computation time quite concerns me. 
Judging from the *.spec files, there are quite some parameters to tweak. 
We have machines, 40/80 cores, 200/500Gb memory, and I was wondering if 
you could give me some advice on how to modify the spec file parameters 
to make optimal use of this potential.

Thanks
Thomas


-- 
Thomas Hackl
Julius-Maximilians-Universität
Department of Bioinformatics
97074 Würzburg, Germany
Fon:  +49 931 - 31 86883
Mail: tho...@un...