[wgs-assembler-users] Input a library with wrong orientation, can I edit gkp?

[Ole K. T. <o.k...@bi...>]

Hi,
I ran classify on an Illumina mate pair library, and managed to use
one of the old versions of gatekeeper to dump the reads, so I guess
they were dumped as innie reads. I thought the library still was
outtie, and input that into an assembly. Now, after finishing
overlapper (using grid and grid version of overlapStoreBuild) I have a
ovlStore of 3.3 TB, so I'd rather not run that again if I can avoid
it.

I see from this page:
http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=Gatekeeper#Library
that there are some options in changing orientation of the library,
but only "innie" is supported it says. Do you have any suggestions of
what I can do? Would it not work changing the library to "outtie"?

Thank you.

Ole