[wgs-assembler-users] No Overlaps found

[Thomas H. <tho...@un...>]

Hello,

I am currently testing the pacBioToCA pipeline on some sample data in 
preparation for some upcoming experiments. The pipeline always stopped 
with the error: "No Overlaps found". I already figured out that 
obviously these overlaps are required within the pacBio read library, or 
at least that this solves the issue.

Since I do not necessarily expect overlaps in our data but still want to 
correct them with Illumina short reads for further analysis, I would 
like to know, if this is even possible with your pipeline. And also I do 
not really understand, why there is an overlap computation step before 
the error correction step?

Regards
Thomas