[wgs-assembler-users] safeWrite()-- EXPECTED during unitig building

[Louis L. <lou...@ma...>]

Hello,
  I'm trying to assemble pacbioToCA error corrected pacbio reads. The
genome is ecoli.

The correction went very wellm but when I tried to assemble I keep
getting this error:

safeWrite()-- EXPECTED 4172, ended up at 4636
buildUnitigs: AS_UTL_fileIO.C:83: void AS_UTL_safeWrite(FILE*, const
void*, const char*, size_t, size_t): Assertion `AS_UTL_ftell(file) ==
expectedposition' failed.


The numbers never change.

This is being run on a linux cluster (single node) which has luster as
it's underlying file system.

I tried with another installation on another server which is also linux,
but the underlying is NFS.

On the NFS server it worked well.

I saw the code of safeWrite explaining problems with FreeBSD, but I'm
not using this.

Wny ideas of what's going on?

I tried, copying my executables from one server to the other and it
didn't change anything. I don't understand why fwrite would behave this
way except if it was a buffer problem.

Thanks
Louis