[wgs-assembler-users] memory usage in deduplicate step

[Christoph H. <chr...@gm...>]

Dear developers and users,

I am encountering some problems in the deduplicate step. Unfortunately, 
the memory usage is steadily increasing until the process dies because 
of exceeding memory limit. So far, I used up to 32 GB. I could of course 
just further increase the available memory, but I was wondering if there 
is a possibility to fix and/or predict the maximum memory usage for this 
step (and maybe also for the next steps) beforehand.

Thanks for your help!

much obliged,
Christoph

Universtiy of Oslo, Norway