From: Mundy, M. <Mun...@ma...> - 2012-05-14 18:32:27
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I¹m using WGS 7.0 and I have two synchronized fastq files with paired-end reads. Based on the documentation at http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=FastqToC A, I tried this command: wgs-7.0/Linux-amd64/bin/fastqToCA -libraryname SRR067601.000 -mates SRR067601.000_1_pair.fq,SRR067601.000_2_pair.fq But it returns this error: ERROR: Mated reads (-mates) must have am insert size (-insertsize). The documentation page says that the insertsize option is optional so I thought that was the flag to distinguish between paired-end reads and mate-pair reads. How do I generate a FRG file for paired-end reads? Mike Mundy |