[wgs-assembler-users] 454 paired-end + wgs assembly

[Santiago R. <san...@gm...>]

Hello everybody!

I'm new to paired-ends assembly, so I'm hoping you could help me.
I have two 454 FLX Titanium libraries: one single-end (common wgs) and one
pair-end (8Kb).

I ran sffToCA two times, one for each library, using "-trim chop" for the
pair-end library (amongst other paired-end parameters).

Now, what parameters you suggest should I put in the specFile to perform
this assembly for better results?

Thank you very much in advance.

Best,

Santino