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38 Add options to reduce cgw logging Scaffolder open 2006-03-16 2008-07-29 1  
35 binary store compatibility Portability open Brian Walenz 2006-03-14 2008-10-08 1  
34 A greedy assembler Unitigger open 2006-03-09 2006-03-09 3  
33 Add CE statistics to QC report Assembly_analysis open 2006-03-09 2008-07-29 5  
32 Add TAMPA to pipeline Assembly_analysis open 2006-03-09 2006-03-09 5  
31 Explain unused mates Assembly_analysis open 2006-03-09 2006-03-09 5  
30 Explain unused fragments Assembly_analysis open 2006-03-09 2006-03-09 5  
29 Screen 3rd party sequence for problems Gatekeeper open 2006-03-09 2006-03-09 5  
28 Add DPI to QC Assembly_analysis open 2006-03-09 2008-07-29 5  
26 QC should count all mates, not trust cgw Assembly_analysis open 2006-03-09 2008-08-20 3  
25 Plot the distribution of unitg A-stats Assembly_analysis open 2006-03-09 2006-03-09 5  
24 Graph polymorphism index Assembly_analysis open 2006-03-09 2006-03-09 5  
23 Generalize N50 scaffold statistic Assembly_analysis open 2006-03-09 2006-03-09 5  
22 Generalize N50 contig statistic Assembly_analysis open 2006-03-09 2006-03-09 5  
21 Where did my repeat-reads go? Assembly_analysis open 2006-03-09 2006-03-09 5  
20 Estimate library self-similarity Overlapper open Sergey Koren 2006-03-09 2008-08-21 5  
19 CGW reports negative gap when alignment fails Scaffolder open 2006-03-09 2008-08-21 5  
18 Sequence gap report Scaffolder open Jason Rafe Miller 2006-03-09 2008-08-21 6  
14 Option to make cgw walk into repeat gaps Scaffolder open 2006-03-09 2006-03-15 5  
13 Catalog of utilities outside main pipeline None open 2006-03-09 2006-03-09 2  
12 Document terminator inputs and outputs Terminator open 2006-03-09 2006-03-09 2  
11 Document cgw inputs and outputs Scaffolder open 2006-03-09 2006-03-09 2  
10 Document cns inputs and outputs Consensus open 2006-03-09 2006-03-09 2  
9 Document unitigger inputs and outputs Unitigger open 2006-03-09 2006-03-09 2  
8 Document ovl inputs and outputs Overlapper open 2006-03-09 2006-03-09 2  
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