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#37 BOG to replace unitigger

Unitigger
closed
Eli V
Rewrite (11)
4
2008-07-29
2006-03-16
No

Rewrite the unitigger to simplify its algorithm and
implementation. The replacement program in AS_BOG is
called bog for best overlap graph.

Discussion

  • Jason Rafe Miller

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    The BOG module is written. It works well on small genomes where the reads derive from Sanger and 454 sequencing, the read lengths are mixed, and at least some reads are mated. A paper has been submitted for publication in which the pipeline with BOG is called CABOG.

     
  • Jason Rafe Miller

    • status: open --> closed
     

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