While running buildunitigs on datasets containing illumina (tried with two different insect genomes), bog crashes with the dreaded error
buildUnitigs: AS_BOG_MateChecker.cc:1066: UnitigBreakPoints* MateChecker::computeMateCoverage(Unitig*, BestOverlapGraph*, int): Assertion `loc.bgn <= bad.end+1 || loc.end <= bad.end+1' failed
but only when the 'error limit' is not 0 (tried with as low as 1.5). (This is with the CVS version checked out 2010-08-06).
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