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• Zasha Weinberg (admin)

[Zasha Weinberg]

A paper describing the changes in CMfinder 0.4.1 is in preparation.

If you use CMfinder 0.4.1, please cite one or more of the following:

1. the paper on the cmfinder program, which covers most of the features from CMfinder 0.3. https://academic.oup.com/bioinformatics/article/22/4/445/184450/CMfinder-a-covariance-model-based-RNA-motif
2. Zizhen Yao's dissertation, which describes RNAphylo (also called pscore), and some improvements to the cmfinder program: http://dl.acm.org/citation.cfm?id=1467594
3. The user manual for CMfinder 0.4.1, which covers the improvements I made.