In the latest version to be released for Webmin this morning (04/02/2013), it appears that you updated the primary.xml for the yum repo, but did not update the repomd.xml file. This results in an error when trying to use yum:
http://download.webmin.com/download/yum/repodata/primary.xml.gz: [Errno -1] Metadata file does not match checksum
I would guess you need to change the hash stored in repomd.xml to reflect the changes made to primary.xml
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