Recent changes to Home

Home modified by Hiroki Ueda

Hiroki Ueda — Tue, 25 Oct 2016 06:34:43 -0000

--- v3
+++ v4
@@ -14,6 +14,9 @@
 DbSNP and ALT region aware reference construction
 Mapping for Virus Integration

+**readme**
+[Voltmanual]
+

 The wiki uses [Markdown](/p/voltmr/wiki/markdown_syntax/) syntax.

Home modified by Hiroki Ueda

Hiroki Ueda — Tue, 25 Oct 2016 06:31:42 -0000

--- v2
+++ v3
@@ -1,10 +1,19 @@
-Description
+**Description**
+
 ＶｏｌｔＭＲ　is pure java NGS (DNA/RNA) mapping and realignment soft that run on Hadoop 2.0 The accuracy is comparable to BWA-MEM and novoalgin with speed faster than those aligner. Using 100 core, VoltMR finish typical exome sample (10GB),mapping, sort, mark duplicate, local realignment in 30 minitue. It use about 10GB to 15GB RAM for each hadoop mapper and reducer.
 Currently, VoltMR take fastq as a input and output bam/ADAM format. 
 For DNA mapping, GATK compatible realignment/recalbration followed after mapping.
 For RNA mapping, splice aware algorithm is implemented. Volt is open source, released as "LGPLv3"

+**Features**
+
+DNA mapping with Realignment/recalibration
+Splice Aware RNA mapping
+BAM/Hadoop-BAM/ADAM output
+DbSNP and ALT region aware reference construction
+Mapping for Virus Integration
+

 The wiki uses [Markdown](/p/voltmr/wiki/markdown_syntax/) syntax.

Home modified by Hiroki Ueda

Hiroki Ueda — Tue, 25 Oct 2016 06:29:27 -0000

--- v1
+++ v2
@@ -1,6 +1,10 @@
-Welcome to your wiki!
+Description
+ＶｏｌｔＭＲ　is pure java NGS (DNA/RNA) mapping and realignment soft that run on Hadoop 2.0 The accuracy is comparable to BWA-MEM and novoalgin with speed faster than those aligner. Using 100 core, VoltMR finish typical exome sample (10GB),mapping, sort, mark duplicate, local realignment in 30 minitue. It use about 10GB to 15GB RAM for each hadoop mapper and reducer.
+Currently, VoltMR take fastq as a input and output bam/ADAM format. 
+For DNA mapping, GATK compatible realignment/recalbration followed after mapping.
+For RNA mapping, splice aware algorithm is implemented. Volt is open source, released as "LGPLv3"

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
+

 The wiki uses [Markdown](/p/voltmr/wiki/markdown_syntax/) syntax.

Home modified by Hiroki Ueda

Hiroki Ueda — Wed, 01 Apr 2015 07:30:28 -0000

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Project Members:

Hiroki Ueda (admin)