Re: [vmtk-users] vmtkApps?

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Hi Evan,
 ok, I see. Try with the following and please report the eventual error you get.

PATH
  C:\"Program Files (x86)"\vmtk\Install\bin;
  C:\"Program Files (x86)"\vmtk\Install\lib;
  C:\"Program Files (x86)"\vmtk\Install\lib\vtk-5.8;
  C:\"Program Files (x86)"\vmtk\Install\lib\vmtk;
  C:\"Program Files (x86)"\vmtk\Install\bin\Python;
PYTHONPATH
  C:\"Program Files (x86)"\vmtk\Install\lib\vmtk;
  C:\"Program Files (x86)"\vmtk\Install\bin\Python;
  C:\"Program Files (x86)"\vmtk\Install\lib\vtk-5.8;

Luca

On May 6, 2013, at 9:28 PM, Evan Kao wrote:

> Hello Luca, 
> 
> I tried the batch file, but it didn't work.  I think "set" in Win XP only allows temporary changes to environmental variables.  I can however use My Computer > System Properties > Advanced > Environmental Variables to modify PATH permanently and create a new variable PYTHONPATH.  But some of the directories you gave didn't match up to what was installed.  Here are the list of directories in vmtk on my machine:
> 
> C:\Program Files (x86)\vmtk\icon
> C:\Program Files (x86)\vmtk\Install
> C:\Program Files (x86)\vmtk\Install\bin
> C:\Program Files (x86)\vmtk\Install\lib
> C:\Program Files (x86)\vmtk\Install\bin\Python
> C:\Program Files (x86)\vmtk\Install\bin\Python\vtk
> C:\Program Files (x86)\vmtk\Install\bin\Python\vtk\gtk
> C:\Program Files (x86)\vmtk\Install\bin\Python\vtk\qt
> C:\Program Files (x86)\vmtk\Install\bin\Python\vtk\qt4
> C:\Program Files (x86)\vmtk\Install\bin\Python\vtk\test
> C:\Program Files (x86)\vmtk\Install\bin\Python\vtk\tk
> C:\Program Files (x86)\vmtk\Install\bin\Python\vtk\util
> C:\Program Files (x86)\vmtk\Install\bin\Python\vtk\wx
> C:\Program Files (x86)\vmtk\Install\lib\vmtk
> C:\Program Files (x86)\vmtk\Install\lib\vtk-5.8
> C:\Program Files (x86)\vmtk\Install\lib\vmtk\vmtk
> 
> I can make guesses on a few, but not all (like site-packages or InsightToolkit).
> 
> Thanks,
> Evan Kao
> 
> 
> On Mon, May 6, 2013 at 5:44 AM, Luca Antiga <luc...@or...> wrote:
> Hi Evan,
>  it's an environment variables issue and yes, it's currently not nice to run vmtkApps in Windows, sorry about this.
> 
> What you can do is create a patchanterinterpolatecenterlines.bat file (the name is irrelevant, the important is the .bat extension) with the following content:
> 
> set VMTK_DIR=C:\"Program Files (x86)"\vmtk
> set PATH=%VMTK_DIR%bin;%VMTK_DIR%lib\InsightToolkit;%VMTK_DIR%lib\Python;%PATH%
> set PYTHONPATH=%VMTK_DIR%lib\site-packages;%VMTK_DIR%lib\vtk-5.6;%VMTK_DIR%lib\vmtk
> cd %VMTK_DIR%
> python patchanterinterpolatecenterlines.py
> 
> Then double click on the .bat file. Let me know if this works or what error messages it produces.
> 
> We'll have to think about a nicer solution than this in the future.
> 
> 
> Luca
> 
> 
> On May 2, 2013, at 10:04 PM, Evan Kao wrote:
> 
>> Hi Luca, 
>> 
>> You can move the files (you just need the files in vmtkApps/CerebralAneurysms/ParentVesselReconstruction) into any directory. 
>> The you should invoke the scripts at the command line, but in order to do this you need Windows to "see" python and the vmtk modules.
>> What are the directories where Python and vmtk are installed on our machine?
>> 
>> Both vmtk and Python are in their default directories (Python was installed through vmtk):
>> 
>> C:\Program Files (x86)\vmtk
>> C:\Python27
>> 
>> It seems I was able to open patchanterinterpolatecenterlin
>> es.py in the command line interface, but it doesn't see the vmtk modules ("Import Error: no module named vtk").  How can I remedy this?
>> 
>> Thanks,
>> Evan Kao
>> 
>> 
>> On Wed, May 1, 2013 at 5:30 AM, Luca Antiga <luc...@or...> wrote:
>> Hi Evan,
>> 
>> On Apr 26, 2013, at 8:39 AM, Evan Kao wrote:
>> 
>>> Hi Luca,
>>> 
>>> I had some questions on using the Python scripts (having little Python experience):
>>> 
>>> 1.  Into which directory should I move the files (in Windows; files obtained from the source file zip)?
>> 
>> You can move the files (you just need the files in vmtkApps/CerebralAneurysms/ParentVesselReconstruction) into any directory. 
>> The you should invoke the scripts at the command line, but in order to do this you need Windows to "see" python and the vmtk modules.
>> What are the directories where Python and vmtk are installed on our machine?
>> 
>>> 2.  I was confused by the form of the command "python patchandinterpolatecenterline.py directoryPath id1 lateral" from the tutorial.  Are we supposed to call these functions from the command line/Python shell or can we still do it inside vmtk?
>> 
>> They are meant to be run outside of vmtk, at the command line.
>> 
>> Luca
>> 
>>> Thanks for the help,
>>> Evan Kao
>>> 
>>> 
>>> 
>>> On Mon, Apr 22, 2013 at 11:03 AM, Evan Kao <to...@gm...> wrote:
>>> Hi Luca,
>>> 
>>> Thanks for the info.
>>> 
>>> 
>>> On Mon, Apr 22, 2013 at 7:01 AM, Luca Antiga <luc...@or...> wrote:
>>> Hello Evan,
>>>  at the present stage you can download them from github.com/vmtk/vmtk
>>> 
>>> If you don't use git, just get the source code zip at
>>> 
>>> https://github.com/vmtk/vmtk/archive/master.zip
>>> 
>>> and unpack. vmtkApps contains the Python scripts you're looking for.
>>> 
>>> Best,
>>> 
>>> Luca
>>> 
>>> 
>>> On Apr 20, 2013, at 12:09 AM, Evan Kao wrote:
>>> 
>>> > Hello vmtk-users,
>>> >
>>> > I'm interested in going through the parent vessel reconstruction tutorial but I don't think I have the relevant Python scripts.  The tutorial says the files are in the vmtkApps folder, but I couldn't find anything like that.  Are they usually included in the installation?  Where could I find these scripts (and possibly other vmtkApps)?
>>> >
>>> > Thank you,
>>> > Evan Kao
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