Re: [vmtk-users] Automatically executing VMTK centerline

[Luca A. <luc...@or...>]

Hi Anouk,
 I'm not really sure about what's not working here, the output from vmtk
you attached is not self-explanatory, unfortunately.
Just a note: you shouldn't enclose option values in quotes ('profileidlist')
but just use values unquoted

vmtksurfacereader -ifile H:\Cath_recon_4(1)_10(1)_SC.stl -f stl  --pipe vmtkcenterlines -endpoints 1 -seedselector profileidlist -sourceids 0 -targetids 1 --pipe  vmtkcenterlinegeometry -ofile H:\Cath_recon_4(1)_10(1)_SC_output_testing.dat

Can you try sending more of the text output? Also, does the pipe hang
or just exits successfully without generating a file?

Thanks

Luca


On Apr 3, 2013, at 2:15 PM, Anouk Post wrote:

> Hi Luca,
> 
> You were right, I used idlist instead of profileidlist. 
> 
> Unfortunately, it didn't work, I don't get an output file. 
> 
> INPUT:
> 
> vmtksurfacereader -ifile H:\Cath_recon_4(1)_10(1)_SC.stl -f "stl"  --pipe vmtkcenterlines -endpoints 1 -seedselector 'profileidlist' -sourceids 0 -targetids 1 --pipe  vmtkcenterlinegeometry -ofile H:\Cath_recon_4(1)_10(1)_SC_output_testing.dat
> 
> OUTPUT:
> Image of output is attached (could not copy the text).
> 
> Do you know why it's not working?
> 
> Thanks!
> 
> Best,
> 
> Anouk
> 
> 
> 
> 
> 
> 
> 
> On 29 March 2013 13:28, Luca Antiga <luc...@or...> wrote:
> Hi Anouk,
>  this is what I'd expect from -seedselector idlist, not -seedselector profileidlist.
> Are you sure it was the latter and not the former?
> 
> Luca
> 
> 
> On Mar 29, 2013, at 2:07 PM, Anouk Post wrote:
> 
>> Hi Luca,
>>  
>> I already tried that and it didn't work. It gave me only a partial reconstruction of the centerline (a very short one).
>>  
>> Best,
>>  
>> Anouk
>> 
>> On 29 March 2013 13:04, Luca Antiga <luc...@or...> wrote:
>> Hi Anouk,
>>  try with 
>> -seedselector profileidlist -sourceids 0 -targetids 1
>> 
>> (hoping you have a recent enough version of vmtk)
>> 
>> Best,
>> 
>> 
>> Luca
>> 
>> 
>> On Mar 25, 2013, at 7:36 PM, Anouk Post wrote:
>> 
>>> Dear VMTK users,
>>> 
>>> I am using VMTK centerline to calculate the centerline of an stl file as follows:
>>> 
>>> vmtksurfacereader -ifile /Users/.../Phantom_Best_Catheter_now.stl -f "stl"  --pipe vmtkcenterlines -endpoints 1 -seedselector openprofiles --pipe  vmtkcenterlinegeometry -ofile /Users/.../Phantom_Best_Catheter_now_output.dat
>>> 
>>> 
>>> 
>>> For all the different input files I use, the seedselector option always leads to me pressing 'q' '0' '1' and then it works. So I close the viewer, and I think I set the source id as 0 and the target id as 1. 
>>> 
>>> Is there a way to make this an automatic process so I don't have to type q, 0, 1 each time? I've tried using seedselector idlist but I'm not sure how to use it (it does not give me the right answer when I use -sourceids 0 -targetids 1. 
>>> 
>>> Does anyone know a way to do this?
>>> 
>>> 
>>> Thanks in advance!
>>> 
>>> 
>>> Best wishes,
>>> 
>>> 
>>> Anouk
>>> 
>>> ------------------------------------------------------------------------------
>>> Everyone hates slow websites. So do we.
>>> Make your web apps faster with AppDynamics
>>> Download AppDynamics Lite for free today:
>>> http://p.sf.net/sfu/appdyn_d2d_mar_______________________________________________
>>> vmtk-users mailing list
>>> vmt...@li...
>>> https://lists.sourceforge.net/lists/listinfo/vmtk-users
>> 
>> 
>> 
>> 
>> -- 
>> Best Wishes,
>> 
>> Anouk
>> ------------------------------------------------------------------------------
>> Own the Future-Intel(R) Level Up Game Demo Contest 2013
>> Rise to greatness in Intel's independent game demo contest. Compete 
>> for recognition, cash, and the chance to get your game on Steam. 
>> $5K grand prize plus 10 genre and skill prizes. Submit your demo 
>> by 6/6/13. http://altfarm.mediaplex.com/ad/ck/12124-176961-30367-2_______________________________________________
>> 
>> vmtk-users mailing list
>> vmt...@li...
>> https://lists.sourceforge.net/lists/listinfo/vmtk-users
> 
> 
> 
> 
> -- 
> Best Wishes,
> 
> Anouk
> <vmtk.jpg>------------------------------------------------------------------------------
> Minimize network downtime and maximize team effectiveness.
> Reduce network management and security costs.Learn how to hire 
> the most talented Cisco Certified professionals. Visit the 
> Employer Resources Portal
> http://www.cisco.com/web/learning/employer_resources/index.html_______________________________________________
> vmtk-users mailing list
> vmt...@li...
> https://lists.sourceforge.net/lists/listinfo/vmtk-users