Re: [vmtk-users] Automatically executing VMTK centerline

[Luca A. <luc...@or...>]

Hi Anouk,
 this is what I'd expect from -seedselector idlist, not -seedselector profileidlist.
Are you sure it was the latter and not the former?

Luca


On Mar 29, 2013, at 2:07 PM, Anouk Post wrote:

> Hi Luca,
>  
> I already tried that and it didn't work. It gave me only a partial reconstruction of the centerline (a very short one).
>  
> Best,
>  
> Anouk
> 
> On 29 March 2013 13:04, Luca Antiga <luc...@or...> wrote:
> Hi Anouk,
>  try with 
> -seedselector profileidlist -sourceids 0 -targetids 1
> 
> (hoping you have a recent enough version of vmtk)
> 
> Best,
> 
> 
> Luca
> 
> 
> On Mar 25, 2013, at 7:36 PM, Anouk Post wrote:
> 
>> Dear VMTK users,
>> 
>> I am using VMTK centerline to calculate the centerline of an stl file as follows:
>> 
>> vmtksurfacereader -ifile /Users/.../Phantom_Best_Catheter_now.stl -f "stl"  --pipe vmtkcenterlines -endpoints 1 -seedselector openprofiles --pipe  vmtkcenterlinegeometry -ofile /Users/.../Phantom_Best_Catheter_now_output.dat
>> 
>> 
>> 
>> For all the different input files I use, the seedselector option always leads to me pressing 'q' '0' '1' and then it works. So I close the viewer, and I think I set the source id as 0 and the target id as 1. 
>> 
>> Is there a way to make this an automatic process so I don't have to type q, 0, 1 each time? I've tried using seedselector idlist but I'm not sure how to use it (it does not give me the right answer when I use -sourceids 0 -targetids 1. 
>> 
>> Does anyone know a way to do this?
>> 
>> 
>> Thanks in advance!
>> 
>> 
>> Best wishes,
>> 
>> 
>> Anouk
>> 
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> 
> 
> 
> -- 
> Best Wishes,
> 
> Anouk
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