Recent changes to Home

Home modified by Donatien Chedom Fotso

Donatien Chedom Fotso — Fri, 08 Nov 2013 13:17:58 -0000

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 Contains :

-[Introduction]
+Introduction

 [General Usage]

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  [[download_button]]

- 
+
 
+
+Introduction 
+===========

 VirHap is an open-source software package for viral quasi-species reconstruction, which makes use of a
 novel phyloprobabilistic approach to infer the sub clonal composition and evolutionary history of a viral population from NGS data. The program aims to characterize and quantify the composition, the abundance and the evolutionary path of the underlying viral population within a given host by analyzing Next Generation Sequencing data.

Home modified by Donatien Chedom Fotso

Donatien Chedom Fotso — Fri, 08 Nov 2013 13:13:15 -0000

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  [[download_button]]

+ 

 VirHap is an open-source software package for viral quasi-species reconstruction, which makes use of a
 novel phyloprobabilistic approach to infer the sub clonal composition and evolutionary history of a viral population from NGS data. The program aims to characterize and quantify the composition, the abundance and the evolutionary path of the underlying viral population within a given host by analyzing Next Generation Sequencing data.

Home modified by Donatien Chedom Fotso

Donatien Chedom Fotso — Fri, 08 Nov 2013 13:12:03 -0000

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 Welcome to VirHap wiki!
+=======================
+
+Contains :
+
+[Introduction]
+
+[General Usage]
+
+[Getting Started]
+
+[Example]
+

  [[download_button]]

Home modified by Donatien Chedom Fotso

Donatien Chedom Fotso — Fri, 08 Nov 2013 13:09:36 -0000

Home modified by Donatien Chedom Fotso

Donatien Chedom Fotso — Fri, 08 Nov 2013 12:57:21 -0000

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-Welcome to VirHap wiki! [[download_button]]
+Welcome to VirHap wiki!
+
+ [[download_button]]

 VirHap is an open-source software package for viral quasi-species reconstruction, which makes use of a

Home modified by Donatien Chedom Fotso

Donatien Chedom Fotso — Fri, 08 Nov 2013 12:57:03 -0000

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-Welcome to your wiki!
+Welcome to VirHap wiki! [[download_button]]
+
+
+VirHap is an open-source software package for viral quasi-species reconstruction, which makes use of a
+novel phyloprobabilistic approach to infer the sub clonal composition and evolutionary history of a viral population from NGS data. The program aims to characterize and quantify the composition, the abundance and the evolutionary path of the underlying viral population within a given host by analyzing Next Generation Sequencing data.
+
+VirHap takes as input the collection of reads (or several collections of reads in case of many data samples or daily data) and the reference genome and it constructs the evolutionary tree exhibiting the species abundance profile and the list of haplotypes along with their prevalences.
+That viral quasispecies reconstruction has three phases (see fig. 1), each having several steps or modules.
+They are :
+
+1. Reads processing
+
+2. Mutations computation
+
+3. Quasispecies Reconstruction
+

 This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

 The wiki uses [Markdown](/p/virhap/wiki/markdown_syntax/) syntax.

 [[members limit=20]]
-[[download_button]]

Home modified by Donatien Chedom Fotso

Donatien Chedom Fotso — Thu, 07 Nov 2013 16:43:11 -0000

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Project Members:

Donatien Chedom Fotso (admin)