Recent changes to CrashCourse

CrashCourse modified by Marco Li

Marco Li — Thu, 12 Dec 2013 08:43:50 -0000

CrashCourse modified by Marco Li

Marco Li — Thu, 12 Dec 2013 08:41:58 -0000

--- v4
+++ v5
@@ -1,11 +1,12 @@
 *Crash course*
 ***ViralFusionSeq***

-1. Download *vfs-yyyy-mm-dd.tar.gz*
-+ Upload the file to your server
-+ “tar –xvzf *vfs-yyyy-mm-dd.tar.gz*”
-+ go into the unzipped vfs/ directory
-+ “perl *1.VFS.sys.check.pl*”
-+ Configure *vfs.conf*
-  Make sure the PATH to databases and third-party programs are correct. And fastq files are in same directory of *viral.fusion.pl*
-+ “perl *2.run.example.dataset.pl*”
+1. Download vfs-yyyy-mm-dd.tar.gz
+2. Upload the file to your server
+3. “tar –xvzf vfs-yyyy-mm-dd.tar.gz”
+4. go into the unzipped vfs/ directory
+5. “perl 1.VFS.sys.check.pl”. The script would check the dependencies and download the appropriate databases
+6. Configure vfs.conf under  the vfs/ directory
+•  Make sure the PATH to databases and third-party programs are correct
+•  Check that the fastq files are in same directory of viral.fusion.pl. Or you can create symbolic links there
+7. “perl 2.run.example.dataset.pl”

WikiPage CrashCourse modified by Marco Li

Marco Li — Mon, 03 Dec 2012 03:12:47 -0000

WikiPage CrashCourse modified by Marco Li

Marco Li — Mon, 03 Dec 2012 02:58:50 -0000

--- v2
+++ v3
@@ -9,4 +9,3 @@
 + Configure *vfs.conf*
   Make sure the PATH to databases and third-party programs are correct. And fastq files are in same directory of *viral.fusion.pl*
 + “perl *2.run.example.dataset.pl*”
-https://sourceforge.net/p/viralfusionseq/wiki/Crash%20Course/edit#

WikiPage CrashCourse modified by Marco Li

Marco Li — Mon, 03 Dec 2012 02:58:28 -0000

--- v1
+++ v2
@@ -9,3 +9,4 @@
 + Configure *vfs.conf*
   Make sure the PATH to databases and third-party programs are correct. And fastq files are in same directory of *viral.fusion.pl*
 + “perl *2.run.example.dataset.pl*”
+https://sourceforge.net/p/viralfusionseq/wiki/Crash%20Course/edit#

WikiPage Crash Course modified by Marco Li

Marco Li — Mon, 03 Dec 2012 02:56:01 -0000

*Crash course* ***ViralFusionSeq*** 1. Download *vfs-yyyy-mm-dd.tar.gz* + Upload the file to your server + “tar –xvzf *vfs-yyyy-mm-dd.tar.gz*” + go into the unzipped vfs/ directory + “perl *1.VFS.sys.check.pl*” + Configure *vfs.conf* Make sure the PATH to databases and third-party programs are correct. And fastq files are in same directory of *viral.fusion.pl* + “perl *2.run.example.dataset.pl*”