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From: Card, D. C <dc...@ut...> - 2015-05-14 06:18:54
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Hello, I’d just like to know how VCFtools goes about thinning sites. Does it simply find a SNP and ignore any others for the specified distance (i.e., always take the first SNP) or does it select random ones from a distance starting at SNP #1 (if others exist in the window)? One obviously leads to the same SNPs being present after filtering while the other will result in different sets of SNPs. Thank you, Daren Daren Card Ph.D. Candidate Castoe Lab University of Texas at Arlington dc...@ut...<mailto:dc...@ut...> www.darencard.net |