#7 allow using vcf.gz as input (file or stream)

closed
None
5
2012-09-12
2011-01-30
Anonymous
No

VCFs are huge so most people gzip them. It would be great if I could use vcftools on gzipped VCFs somehow (either as -vcf input or stream)

Discussion

  • Adam Auton

    Adam Auton - 2011-01-31

    This feature has actually been implemented in the SVN version, and will soon be included in the next release. However, be warned that this feature is experimental and quite slow.

    Adam

     
  • Adam Auton

    Adam Auton - 2011-01-31

    Oops. I should say the relevant command is --gzvcf .

     
  • SourceForge Robot

    This Tracker item was closed automatically by the system. It was
    previously set to a Pending status, and the original submitter
    did not respond within 14 days (the time period specified by
    the administrator of this Tracker).

     

Get latest updates about Open Source Projects, Conferences and News.

Sign up for the SourceForge newsletter:





No, thanks