#27 fst for haploid genome

[prakash kancherla]

Hello,

I would like to caliculate Fst between three populations, the vcf file contains 29 haploid genomes. i tried with following command vcftools --vcf my.vcf --weir-fst-pop f-pop1.txt --weir-fst-pop g-pop2.txt --weir-fst-pop l-pop3.txt --out pop1_vs_pop2_vs_pop3.

there problem here is i get an empty output file .weir.fst. the log file has " Fst: Only using diploid sites" but i dont have any diploid sites in my vcf file as it is a haploid genome.

I highly appreciate any help
Thanks
Prak