#47 vcf-consensus handling of case

[travcollier]

vcf-consensus throws the "The fasta sequence does not match the REF at..." error if the VCF file and the REF don't agree case wise. This is a bug IMO.

Trivial to fix:
perl/vcf-consensus: line 194

• if ( $$vline[3] ne substr($$opts{fa_buf},$pos,$ref_len) )
• if ( uc($$vline[3]) ne uc(substr($$opts{fa_buf},$pos,$ref_len)) )