More data columns then headers in somatic output

Variant detection in next-generation sequencing data

Brought to you by: dkoboldt

#4 More data columns then headers in somatic output

Status: open

Owner: nobody

Labels: None

Priority: 5

Updated: 2012-11-15

Created: 2012-11-15

Creator: Henry Zhang

Private: No

The command: java -jar VarScan.v2.3.2.jar somatic normal.pileup tumor.pileup output.basename
generated 19 columns of headers and 23 columns of data values.

Also, add --output-vcf 1 did not get output in VCF format.

Discussion

Henry Zhang - 2012-11-15

SJOS019.varscan2.snp.fisrt50

If you would like to refer to this comment somewhere else in this project, copy and paste the following link:

More data columns then headers in somatic output

Variant detection in next-generation sequencing data

Group

Searches

Help

#4 More data columns then headers in somatic output

Discussion