I am currently using Variationhunter-SC (version 0.03) and had one question
regarding the output of the program. In the main .SV output file, there is a
field called "SVtype." This field contains numbers that run from 1 to 5, and
the documentation on the meanings of these numbers is not very clear.
I think that I may have deciphered some of the numbers, but I am unsure. I
believe that the SVtypes are as follows:
SVtype 1: Insertion
SVtype 2: Deletion
SVtype 3: Inversion (FF orientation of reads)
SVtype 4: Inversion (RR orientation of reads)
SVtype 5: ??
Am I correct with my guesses on SVtypes 3 and 4? Also, what is the
significance of SVtype 5? Thank you in advance for your replies.
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Hello,
I am currently using Variationhunter-SC (version 0.03) and had one question
regarding the output of the program. In the main .SV output file, there is a
field called "SVtype." This field contains numbers that run from 1 to 5, and
the documentation on the meanings of these numbers is not very clear.
I think that I may have deciphered some of the numbers, but I am unsure. I
believe that the SVtypes are as follows:
SVtype 1: Insertion
SVtype 2: Deletion
SVtype 3: Inversion (FF orientation of reads)
SVtype 4: Inversion (RR orientation of reads)
SVtype 5: ??
Am I correct with my guesses on SVtypes 3 and 4? Also, what is the
significance of SVtype 5? Thank you in advance for your replies.