specifically requesting libreadline5 in QIIME installations
updated URL for apt installations
forgot to change version numbers in one filename
fixing quote syntax
upgrading ExtJS to 3.4.1.1
forgot to add the redirect to curl command. I ...
changing redirect path of extjs zip file
adding redirect flag to curl command
adding echo command
more edits to hopefully get extjs.sh to work
more syntax fixes
bug in extjs variable path
beefed up cURL code for debugging
change extJS cURL path
Commenting out MongoDB CPAN install line
adding MongoDB to install
adding MongoDB to install
fixed SPAdes path typo
adding RAPSearch2 to software config file
adding RAPSearch2 as a new install
updating qiime custom params
commenting out QIIME 1.8 installation since it ...
updating qiime 1.8 shell script due to outdated...
comment on where python 2.7 is installed in the...
committing fixed humann2.sh script by Kemi
committing fixed humann2.sh script by Kemi
committing fixed humann2.sh script by Kemi
Updated Humann script for Kemi
modified prinseq shell script
adding prinseq shell script to chmod internal f...
adding installation of humann2 (developed by K ...
fixed commands to use AWS access and secret keys
fixing some ec2 path issues
updated EC2_HOME path, which was currently broken
updating vp-bundle-ec2 to accomodate for AWS SO...
fixing outdated sourceforge path
fixing outdated sourceforge path
redoing some of the http sourceforge paths
fixing R installation
need to install f77 commpiler
need to install f77 commpiler
need to install f77 commpiler
Fixed cd path typo
reverting Mothur path to original path (for now)
adding extra programs to PATH
modified qiime config and enabling in clovr bui...
various QIIME-1.8 related changes to install an...
commenting out old QIIME install since installe...
adding QIIME v1.8 paths to PYTHONPATH
fixed some typos
installing R from archive since Ubuntu Lucid is...
Altering CPAN module
Adding content-disposition flag to reliableDown...
Changing sybil tarball to be downloaded from dr...
Separated out phylomark python dependency
Separated out phylomark python dependency
Added display name to pipeline configs
Updated python recipe to install bx-python corr...
Corrected mysql recipe
Added mysql data dir move script on image bootup
Trying to move mysql data dir
Altering mysql recipe
Changed R installation
Corrected R recipe
Added mysql installation recipe
Modified mysql installation recipe to enable my...
Disabling qiime 18 recipe
More fixes for qiime 1.8 install
Moving around qiime-related stuff again trying ...
Adding more logging trying to track down some b...
Moving qiime install script to execute after py...
Removing installation of green genes from qiime...
Merging in qiime 1.8 install to original qiime ...
Switching from tmp to mnt for qiime 1.8 recipe
Moving qiime 1.8 recipe further down to avoid a...
Adding echo statements to qiime 1.8 recipe
Adding qiime 1.8 recipe to clovr-standard bundle
Adding qiime 1.8 install recipe
Fixing type in bash if statement
Comitting in some changes to further address sy...
Merging in some changes from latest configure_s...
Upgrading bash to patch out shellshock bash exp...
More work on trying to revert sybil install bac...
Adding bioperl install into ergatis via apt-get
Removing second install of bioperl that is caus...
Downloading Pod::Simple from dropbox to avoid f...
Rolling back some postgres changes to see if th...
Reverting sybil startup scripts during debuggin...
Fixing error in pg_ctlcluster stop/start command
Fixing issue with Inline module; also adding --...
Second attempt at fixing perl modules issues
Fixing broken CPAN DateTime module link
Removing setup of FTP on remote masters
Being a bit more specific in excluding of files...
Ignoring dot files when tagging files
Adding in missing config options for sybil install
Re-working how postgres is installed and how vm...
Switching to sourceforge for cdbfasta and relat...
Switching to sourceforge for cdbfasta and relat...
Switching to sourceforge for cdbfasta and relat...