USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r96] by tmosbruger VCFAnnotator: Added new annotations and better descriptions. VCFReporter: Merged VCFToTable and VCFInfoEdit into one app VCFUtilites: Creates/Uncompresses tabix vcf files. Lots of other small changes.	2013-04-05 16:01:31	Tree
[r95] by tmosbruger Added ParseExonMetrics, which takes the output from several sequencing diagnostic programs and creates PDF containing all of them. Several mods to existing Apps to support tomato v2. Added GenerateOverlapStats, which generates the same metrics as MergePairedSamAlignments, but does not require the time-intensive sort or sam manipulations.	2013-04-02 20:55:14	Tree
[r94] by tmosbruger	2013-04-02 20:40:49	Tree
[r93] by tmosbruger Added VCFAnnovar, VCFEditInfo and VCFToTable to buldfile	2013-03-29 21:27:17	Tree
[r92] by tmosbruger VCFToTable. Converts a vcf file to a tab-delimited spreadsheet.	2013-03-29 21:25:16	Tree
[r91] by biotelerock Mods to vcf classes for the VCFComparator. Set stringency of Sam2USeq SAMReaders to silent.	2013-03-28 15:30:54	Tree
[r90] by tmosbruger Added VCFInfoEdit app and VCFComments class. Mutiple changes to existing support classes.	2013-03-28 02:33:48	Tree
[r89] by tmosbruger Added VCFAnnovar app and supporting classes. Made edits to existing VCF support classes to support VCFAnnovar	2013-03-26 22:50:40	Tree
[r88] by monkeymanstan Added Ketchup info	2013-03-25 17:42:17	Tree
[r87] by monkeymanstan Removed testing classes from package	2013-03-25 17:29:03	Tree

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