2. Fixed an issue where Tomato couldn't find the newly created analysis report to drop in the log.txt file.
3. Fixed error where Tomato couldn't find the appropriate jobs dir for subsamples.
4. Added more sequencing application codes to the list of abbreviated codes
5. Fixed error with moving parsed fresh data report to processedReports folder.
6. Changed code to soft link input fastq files instead of specifying full path (Tomato doesn't allow calling full path)
