USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r48] Maximize Restore History

Primary change is to catch a bug with MergeParedSamAlignments from xxx.bam files leading to a double return in the temp output that then crashes the Picard SortSam

Authored by: biotelerock 2013-01-16

Browse code at this revision

Parent: [r47]

Child: [r49]

changed	/trunk/Documentation/USeqDocumentation/releaseNotes.txt
changed	/trunk/Source/edu/utah/seq/data/FilterPointData.java
changed	/trunk/Source/edu/utah/seq/parsers/MergePairedSamAlignments.java
changed	/trunk/Source/edu/utah/seq/parsers/VCFTabix.java
changed	/trunk/Source/util/bio/cluster/HierarchicalClustering.java
changed	/trunk/Source/util/bio/parsers/SRAProcessor.java
changed	/trunk/Source/util/gen/IO.java

USeq Source Code

Commit [r48] Maximize Restore History

/trunk/Documentation/USeqDocumentation/releaseNotes.txt Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/FilterPointData.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/MergePairedSamAlignments.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/VCFTabix.java Diff Switch to side-by-side view

/trunk/Source/util/bio/cluster/HierarchicalClustering.java Diff Switch to side-by-side view

/trunk/Source/util/bio/parsers/SRAProcessor.java Diff Switch to side-by-side view

/trunk/Source/util/gen/IO.java Diff Switch to side-by-side view