USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r32] by biotelerock Lots of modifications for making merged sam alignments from proper pairs. Many changes to the base recalling applications.	2012-12-15 14:11:23	Tree
[r31] by tmosbruger	2012-12-13 21:02:24	Tree
[r30] by tmosbruger	2012-12-13 15:41:02	Tree
[r29] by tmosbruger Updated ScoreMethylatedRegions to provide aggregate score. Created ScoreEnrichedRegions which does pretty much the same thing as ScoreMethylatedRegions but for ChIPseq or MBDseq data.	2012-12-12 21:37:55	Tree
[r28] by biotelerock	2012-12-11 16:58:55	Tree
[r27] by biotelerock More apps!	2012-12-11 16:58:39	Tree
[r26] by biotelerock New app for taking a master list of regions and intersecting it with one or more lists outputting a spreadsheet showing which in the master were hit by the others. Nice for prioritizing master regions by the number of times it was seen in the others.	2012-12-11 16:57:32	Tree
[r25] by biotelerock	2012-12-11 16:55:53	Tree
[r24] by biotelerock Added method for parsing just chr start stop from a bed file.	2012-12-11 16:54:44	Tree
[r23] by biotelerock Lots of modifications for calling snp bases in BAM alignments	2012-12-11 16:53:56	Tree

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