USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r296] Maximize Restore History

OK:

1) updating the .project file and the new way Eclipse creates faceted projects. Hopefully this minimize the hell of getting USeq installed in Eclipse
2) Added some mods to the CollectBamStats app to skip particular parsing if the log file doesn't have it
3) Added Z-Score calcs, graphs, and xls and bed output to PoReCNV to help in calling real CNVs

Authored by: biotelerock 2015-05-27

Browse code at this revision

Parent: [r295]

Child: [r297]

changed	/trunk/.project
added	/trunk/.settings
added	/trunk/.settings/org.eclipse.jdt.core.prefs
added	/trunk/.settings/org.eclipse.wst.common.project.facet.core.xml
changed	/trunk/Source/edu/utah/seq/cnv/GeneExonSample.java
changed	/trunk/Source/edu/utah/seq/cnv/PoReCNV.java
changed	/trunk/Source/edu/utah/seq/cnv/PoReDataChunk.java
changed	/trunk/Source/edu/utah/seq/parsers/CollectBamStats.java
changed	/trunk/build.properties

/trunk/.project Diff Switch to side-by-side view

/trunk/.settings

Directory.

USeq Source Code

Commit [r296] Maximize Restore History

/trunk/.project Diff Switch to side-by-side view

/trunk/.settings

/trunk/.settings/org.eclipse.jdt.core.prefs Diff Switch to side-by-side view

/trunk/.settings/org.eclipse.wst.common.project.facet.core.xml Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/cnv/GeneExonSample.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/cnv/PoReCNV.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/cnv/PoReDataChunk.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/CollectBamStats.java Diff Switch to side-by-side view

/trunk/build.properties Diff Switch to side-by-side view