USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r286] Maximize Restore History

Finalized the normal exome CNV discovery app. Modified several VCF parsers to insert their app name into the ID field to assist with merging.

Authored by: biotelerock 2015-03-10

Parent: [r285]

Child: [r287]

changed	/trunk/Documentation/USeqDocumentation/releaseNotes.txt
removed	/trunk/Source/edu/utah/seq/analysis/MethylationArrayCVScanner.java
renamed	/trunk/Source/edu/utah/seq/cnv/PRDataChunk.java -> /trunk/Source/edu/utah/seq/cnv/PoReDataChunk.java
renamed	/trunk/Source/edu/utah/seq/cnv/PoisRegCNV.java -> /trunk/Source/edu/utah/seq/cnv/PoReCNV.java
changed	/trunk/Source/edu/utah/seq/vcf/MuTechVCFParser.java
changed	/trunk/Source/edu/utah/seq/vcf/SomaticSniperVCFParser.java
changed	/trunk/Source/edu/utah/seq/vcf/StrelkaVCFParser.java
copied	/trunk/Source/edu/utah/seq/vcf/VCFMerger.java -> /trunk/Source/edu/utah/seq/vcf/VCFConsensus.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFParser.java
changed	/trunk/build.properties

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