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DefinedRegionDifferentialSeq: Changed rLog to rlogTransformation. Apparently rLog is phased out in newer versions

TomatoFarmer: Fixed some constant names

tmosbruger 2014-12-10

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Parent: [r273]

Child: [r275]

changed /trunk/Source/edu/utah/seq/analysis/DefinedRegionDifferentialSeq.java
changed /trunk/Source/edu/utah/tomato/util/TFConstants.java
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