USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r271] Maximize Restore History

Lots of mods....

Authored by: biotelerock 2014-11-25

Browse code at this revision

Parent: [r270]

Child: [r272]

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changed	/trunk/Source/edu/utah/seq/parsers/NovoalignParser.java
changed	/trunk/Source/edu/utah/seq/parsers/ParseIntersectingAlignments.java
changed	/trunk/Source/edu/utah/seq/parsers/ParsedAlignment.java
added	/trunk/Source/edu/utah/seq/parsers/ReadCoverageParser.java
added	/trunk/Source/edu/utah/seq/parsers/Snp2Optical.java
changed	/trunk/Source/edu/utah/seq/vcf/MultiSampleVCFFilter.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFComparator.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFInfo.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFMatch.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFParser.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFRecord.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFSample.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFUtilities.java
changed	/trunk/Source/edu/utah/seq/vcf/cluster/ClusterMultiSampleVCF.java
changed	/trunk/Source/edu/utah/seq/vcf/cluster/VCFCluster.java
changed	/trunk/Source/edu/utah/seq/vcf/cluster/VCFClusterPair.java
changed	/trunk/Source/util/bio/annotation/ExportExons.java
changed	/trunk/Source/util/bio/seq/Seq.java
changed	/trunk/Source/util/gen/IO.java
changed	/trunk/Source/util/gen/Misc.java
changed	/trunk/Source/util/gen/Num.java
changed	/trunk/build.properties

/trunk/Source/edu/utah/seq/parsers/NovoalignParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ParseIntersectingAlignments.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ParsedAlignment.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/ReadCoverageParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/Snp2Optical.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/MultiSampleVCFFilter.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFComparator.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFInfo.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFMatch.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFRecord.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFSample.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFUtilities.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/cluster/ClusterMultiSampleVCF.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/cluster/VCFCluster.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/cluster/VCFClusterPair.java Diff Switch to side-by-side view

/trunk/Source/util/bio/annotation/ExportExons.java Diff Switch to side-by-side view

/trunk/Source/util/bio/seq/Seq.java Diff Switch to side-by-side view

/trunk/Source/util/gen/IO.java Diff Switch to side-by-side view

/trunk/Source/util/gen/Misc.java Diff Switch to side-by-side view

/trunk/Source/util/gen/Num.java Diff Switch to side-by-side view

/trunk/build.properties Diff Switch to side-by-side view

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