USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r265] Maximize Restore History

Added new app to randomly split sam files, mods to MergeSam to filter for bad BamSurgeon reads, removed catch in VCFSample that required read counts for observations (NIST GIB vcfs don't have these).

Authored by: biotelerock 2014-10-14

Browse code at this revision

Parent: [r264]

Child: [r266]

changed	/trunk/Documentation/USeqDocumentation/releaseNotes.txt
added	/trunk/Source/edu/utah/seq/data/SamSplitter.java
changed	/trunk/Source/edu/utah/seq/parsers/MergeSams.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFComparator.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFParser.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFSample.java
changed	/trunk/build.properties

USeq Source Code

Commit [r265] Maximize Restore History

/trunk/Documentation/USeqDocumentation/releaseNotes.txt Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/SamSplitter.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/MergeSams.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFComparator.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFSample.java Diff Switch to side-by-side view

/trunk/build.properties Diff Switch to side-by-side view