USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r26] by biotelerock New app for taking a master list of regions and intersecting it with one or more lists outputting a spreadsheet showing which in the master were hit by the others. Nice for prioritizing master regions by the number of times it was seen in the others.	2012-12-11 16:57:32	Tree
[r25] by biotelerock	2012-12-11 16:55:53	Tree
[r24] by biotelerock Added method for parsing just chr start stop from a bed file.	2012-12-11 16:54:44	Tree
[r23] by biotelerock Lots of modifications for calling snp bases in BAM alignments	2012-12-11 16:53:56	Tree
[r22] by biotelerock Lots of modifications for calling snp bases in BAM alignments	2012-12-11 16:53:35	Tree
[r21] by biotelerock Added feature to output read depth stats for a given list of interrogated bases.	2012-12-11 16:52:40	Tree
[r20] by biotelerock Added some new apps.	2012-12-11 16:52:13	Tree
[r19] by biotelerock Added feature to output read depth stats for a given list of interrogated bases.	2012-12-11 16:50:07	Tree
[r18] by biotelerock Lots of changes, fixed bug with mpileup INDEL parsing, outputing PointData, issues with some coverage graphs.	2012-12-11 16:48:47	Tree
[r17] by biotelerock Added feature to put header from first bam file onto output gzipped sam file.	2012-11-26 23:24:20	Tree

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