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AlignmentEndTrimmer: Option -s added to drop reads with -x number of mismatches. If option -e is specified, RNA editing changes are ignored.

tmosbruger 2014-07-31

changed /trunk/Source/edu/utah/seq/parsers/AlignmentEndTrimmer.java
/trunk/Source/edu/utah/seq/parsers/AlignmentEndTrimmer.java Diff Switch to side-by-side view
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