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Added enhancements to the diff splice detection utilities in DRDS including a graph output for diff spliced genes showing the per exon relative log2Rto. Having problems with DEXSeq and a high false positive rate.

biotelerock 2014-04-04

changed /trunk/Source/edu/utah/seq/analysis/DefinedRegionDifferentialSeq.java
changed /trunk/Source/util/bio/annotation/ExonIntron.java
changed /trunk/Source/util/bio/parsers/UCSCGeneLine.java
changed /trunk/Source/util/gen/Num.java
/trunk/Source/edu/utah/seq/analysis/DefinedRegionDifferentialSeq.java Diff Switch to side-by-side view
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/trunk/Source/util/bio/annotation/ExonIntron.java Diff Switch to side-by-side view
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/trunk/Source/util/bio/parsers/UCSCGeneLine.java Diff Switch to side-by-side view
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/trunk/Source/util/gen/Num.java Diff Switch to side-by-side view
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