USeq Source Code

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Commit [r228] Maximize Restore History

IntersectRegions: Added support for interval trees

DRDSAnnotator: Added support for multiple rows of annotation for the same gene. Unique entries are concentated and reported.
IntervalTree: Added IntervalTree classes w/ Nix's edits. Added option to search for 'containing' regions intead of intersecting regions

Authored by: tmosbruger 2014-04-01

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Parent: [r227]

Child: [r229]

changed	/trunk/Source/edu/utah/diagnostics/DRDSAnnotator.java
changed	/trunk/Source/trans/anno/IntersectRegions.java
added	/trunk/Source/util/intervalTree
added	/trunk/Source/util/intervalTree/Interval.java
added	/trunk/Source/util/intervalTree/IntervalTree.java
added	/trunk/Source/util/intervalTree/LeftComparator.java
added	/trunk/Source/util/intervalTree/Node.java
added	/trunk/Source/util/intervalTree/RightComparator.java

/trunk/Source/edu/utah/diagnostics/DRDSAnnotator.java Diff Switch to side-by-side view

/trunk/Source/trans/anno/IntersectRegions.java Diff Switch to side-by-side view

/trunk/Source/util/intervalTree

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USeq Source Code

Commit [r228] Maximize Restore History

/trunk/Source/edu/utah/diagnostics/DRDSAnnotator.java Diff Switch to side-by-side view

/trunk/Source/trans/anno/IntersectRegions.java Diff Switch to side-by-side view

/trunk/Source/util/intervalTree

/trunk/Source/util/intervalTree/Interval.java Diff Switch to side-by-side view

/trunk/Source/util/intervalTree/IntervalTree.java Diff Switch to side-by-side view

/trunk/Source/util/intervalTree/LeftComparator.java Diff Switch to side-by-side view

/trunk/Source/util/intervalTree/Node.java Diff Switch to side-by-side view

/trunk/Source/util/intervalTree/RightComparator.java Diff Switch to side-by-side view