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BisStat

* Added fix for single stranded lambda datasets, these were crashing the app when calculating the non-conversion rate.
AllelicMethylationDetector
* Added fix for single stranded datasets, this was tossing chromosomes of data that didn't have both a plus and minus strand.
VCFComparator
* Added a catch for GQ scores that are floats instead of ints, was causing app to crash.

biotelerock 2014-03-10

changed /trunk/Documentation/USeqDocumentation/releaseNotes.txt
changed /trunk/Source/edu/utah/seq/analysis/AllelicMethylationDetector.java
changed /trunk/Source/edu/utah/seq/analysis/AllelicRegionMaker.java
changed /trunk/Source/edu/utah/seq/analysis/BisStat.java
changed /trunk/Source/edu/utah/seq/vcf/MultiSampleVCFFilter.java
changed /trunk/Source/edu/utah/seq/vcf/VCFSample.java
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/trunk/Source/edu/utah/seq/analysis/AllelicMethylationDetector.java Diff Switch to side-by-side view
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/trunk/Source/edu/utah/seq/analysis/AllelicRegionMaker.java Diff Switch to side-by-side view
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/trunk/Source/edu/utah/seq/analysis/BisStat.java Diff Switch to side-by-side view
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/trunk/Source/edu/utah/seq/vcf/MultiSampleVCFFilter.java Diff Switch to side-by-side view
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/trunk/Source/edu/utah/seq/vcf/VCFSample.java Diff Switch to side-by-side view
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