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Mods to catch null data issues where no vcf records make it through the parsing. This was causing the app to crash out.

biotelerock 2014-03-05

changed /trunk/Source/edu/utah/seq/vcf/VCFComparator.java
changed /trunk/Source/edu/utah/seq/vcf/VCFParser.java
changed /trunk/Source/util/bio/annotation/Bed.java
/trunk/Source/edu/utah/seq/vcf/VCFComparator.java Diff Switch to side-by-side view
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/trunk/Source/edu/utah/seq/vcf/VCFParser.java Diff Switch to side-by-side view
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/trunk/Source/util/bio/annotation/Bed.java Diff Switch to side-by-side view
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