USeq Source Code

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Commit [r225] Maximize Restore History

VCFSpliceAnnotator

* Bug fix for vcf output where vcf records with no changes were being truncated
SamSVFilter
* Mods for unsoft masking alignments for IGB visualization

Authored by: biotelerock 2014-03-05

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Parent: [r224]

Child: [r226]

changed	/trunk/Documentation/USeqDocumentation/releaseNotes.txt
changed	/trunk/Source/edu/utah/seq/data/SamSVFilter.java
changed	/trunk/Source/edu/utah/seq/data/sam/SamAlignment.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFParser.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFRecord.java
changed	/trunk/Source/edu/utah/seq/vcf/splice/VCFSpliceAnnotator.java

USeq Source Code

Commit [r225] Maximize Restore History

/trunk/Documentation/USeqDocumentation/releaseNotes.txt Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/SamSVFilter.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/data/sam/SamAlignment.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFRecord.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/splice/VCFSpliceAnnotator.java Diff Switch to side-by-side view